I was able to get a few things done with the motor this evening.
I got the alignment dowels out of the block finally. Well, I got one out and I broke one off in the block which I will have to address later. Either way I was able to mount the motor to the stand bracket. I have a buddy coming over in the morning to help me put it on the stand.
I figuired since I was out there and I already had the things, I would start some of the cleanup and prep of the block.
I used a chemical called CLR along with a few wire brushes and started to clean up the top half of the motor. It cleaned up very nice so I decided to put a quick layer of high temp flat black paint on it.
I am very happy with the way things came out so far. Looking at the previous photos this thing was a mess but its cleaning up nicely. Assembly is not to far away. Here are the pics.
Right side cleaned, Left side not.

Everything scrubbed, masked, and ready for paint.

Literally, watching paint dry.